Files in tmuetze/Bioconductor_RCy3_the_new_RCytoscape

Display and manipulate graphs in Cytoscape >= 3.3.0

R/RCy3-package.r R/RCy3.R inst/unitTests/test_RCy3.R man/CytoscapeConnection.Rd man/CytoscapeConnectionClass-class.Rd man/CytoscapeWindow.Rd man/CytoscapeWindowClass-class.Rd man/RCy3.Rd man/addCyEdge.Rd man/addCyNode.Rd man/addGraphToGraph.Rd man/clearSelection.Rd man/connectToNewestCyWindow.Rd man/copyCytoscapeNetwork.Rd man/copyVisualStyle.Rd man/createWindow.Rd man/createWindowFromSelection.Rd man/cy2.edge.names.Rd man/cyPlot.Rd man/deleteAllWindows.Rd man/deleteEdgeAttribute.Rd man/deleteNodeAttribute.Rd man/deleteSelectedEdges.Rd man/deleteSelectedNodes.Rd man/deleteWindow.Rd man/demoSimpleGraph.Rd man/displayGraph.Rd man/dockPanel.Rd man/eda.Rd man/eda.names.Rd man/existing.CytoscapeWindow.Rd man/fitContent.Rd man/fitSelectedContent.Rd man/floatPanel.Rd man/getAdjacentEdgeNames.Rd man/getAllEdgeAttributes.Rd man/getAllEdges.Rd man/getAllNodeAttributes.Rd man/getAllNodes.Rd man/getArrowShapes.Rd man/getAttributeClassNames.Rd man/getCenter.Rd man/getCommandNames.Rd man/getCommandsWithinNamespace.Rd man/getDefaultBackgroundColor.Rd man/getDefaultEdgeReverseSelectionColor.Rd man/getDefaultEdgeSelectionColor.Rd man/getDefaultNodeReverseSelectionColor.Rd man/getDefaultNodeSelectionColor.Rd man/getDirectlyModifiableVisualProperties.Rd man/getEdgeAttribute.Rd man/getEdgeAttributeNames.Rd man/getEdgeCount.Rd man/getFirstNeighbors.Rd man/getGraph.Rd man/getGraphFromCyWindow.Rd man/getLayoutNameMapping.Rd man/getLayoutNames.Rd man/getLayoutPropertyNames.Rd man/getLayoutPropertyType.Rd man/getLayoutPropertyValue.Rd man/getLineStyles.Rd man/getNodeAttribute.Rd man/getNodeAttributeNames.Rd man/getNodeCount.Rd man/getNodePosition.Rd man/getNodeShapes.Rd man/getNodeSize.Rd man/getSelectedEdgeCount.Rd man/getSelectedEdges.Rd man/getSelectedNodeCount.Rd man/getSelectedNodes.Rd man/getViewCoordinates.Rd man/getVisualStyleNames.Rd man/getWindowCount.Rd man/getWindowID.Rd man/getWindowList.Rd man/getZoom.Rd man/hideAllPanels.Rd man/hideNodes.Rd man/hidePanel.Rd man/hideSelectedEdges.Rd man/hideSelectedNodes.Rd man/initEdgeAttribute.Rd man/initNodeAttribute.Rd man/invertEdgeSelection.Rd man/invertNodeSelection.Rd man/layoutNetwork.Rd man/lockNodeDimensions.Rd man/makeRandomGraph.Rd man/makeSimpleGraph.Rd man/noa.Rd man/noa.names.Rd man/ping.Rd man/pluginVersion.Rd man/predictTimeToDisplayGraph.Rd man/raiseWindow.Rd man/redraw.Rd man/renameCytoscapeNetwork.Rd man/restoreLayout.Rd man/saveImage.Rd man/saveLayout.Rd man/saveNetwork.Rd man/selectAllEdges.Rd man/selectAllNodes.Rd man/selectEdges.Rd man/selectEdgesConnectedBySelectedNodes.Rd man/selectFirstNeighborsOfSelectedNodes.Rd man/selectNodes.Rd man/sendEdges.Rd man/sendNodes.Rd man/setCenter.Rd man/setCommandProperties.Rd man/setDefaultBackgroundColor.Rd man/setDefaultEdgeColor.Rd man/setDefaultEdgeFontSize.Rd man/setDefaultEdgeLineStyle.Rd man/setDefaultEdgeLineWidth.Rd man/setDefaultEdgeReverseSelectionColor.Rd man/setDefaultEdgeSelectionColor.Rd man/setDefaultEdgeSourceArrowColor.Rd man/setDefaultEdgeTargetArrowColor.Rd man/setDefaultNodeBorderColor.Rd man/setDefaultNodeBorderWidth.Rd man/setDefaultNodeColor.Rd man/setDefaultNodeFontSize.Rd man/setDefaultNodeLabelColor.Rd man/setDefaultNodeReverseSelectionColor.Rd man/setDefaultNodeSelectionColor.Rd man/setDefaultNodeShape.Rd man/setDefaultNodeSize.Rd man/setEdgeAttributes.Rd man/setEdgeAttributesDirect.Rd man/setEdgeColorDirect.Rd man/setEdgeColorRule.Rd man/setEdgeFontSizeDirect.Rd man/setEdgeLabelColorDirect.Rd man/setEdgeLabelDirect.Rd man/setEdgeLabelOpacityDirect.Rd man/setEdgeLabelRule.Rd man/setEdgeLineStyleDirect.Rd man/setEdgeLineStyleRule.Rd man/setEdgeLineWidthDirect.Rd man/setEdgeLineWidthRule.Rd man/setEdgeOpacityDirect.Rd man/setEdgeOpacityRule.Rd man/setEdgeSourceArrowColorDirect.Rd man/setEdgeSourceArrowColorRule.Rd man/setEdgeSourceArrowOpacityDirect.Rd man/setEdgeSourceArrowRule.Rd man/setEdgeSourceArrowShapeDirect.Rd man/setEdgeTargetArrowColorDirect.Rd man/setEdgeTargetArrowColorRule.Rd man/setEdgeTargetArrowOpacityDirect.Rd man/setEdgeTargetArrowRule.Rd man/setEdgeTargetArrowShapeDirect.Rd man/setEdgeTooltipDirect.Rd man/setEdgeTooltipRule.Rd man/setGraph.Rd man/setLayoutProperties.Rd man/setNodeAttributes.Rd man/setNodeAttributesDirect.Rd man/setNodeBorderColorDirect.Rd man/setNodeBorderColorRule.Rd man/setNodeBorderOpacityDirect.Rd man/setNodeBorderWidthDirect.Rd man/setNodeBorderWidthRule.Rd man/setNodeColorDirect.Rd man/setNodeColorRule.Rd man/setNodeFillOpacityDirect.Rd man/setNodeFontSizeDirect.Rd man/setNodeHeightDirect.Rd man/setNodeImageDirect.Rd man/setNodeLabelColorDirect.Rd man/setNodeLabelDirect.Rd man/setNodeLabelOpacityDirect.Rd man/setNodeLabelRule.Rd man/setNodeOpacityDirect.Rd man/setNodeOpacityRule.Rd man/setNodePosition.Rd man/setNodeShapeDirect.Rd man/setNodeShapeRule.Rd man/setNodeSizeDirect.Rd man/setNodeSizeRule.Rd man/setNodeTooltipRule.Rd man/setNodeWidthDirect.Rd man/setTooltipDismissDelay.Rd man/setTooltipInitialDelay.Rd man/setVisualStyle.Rd man/setWindowSize.Rd man/setZoom.Rd man/showGraphicsDetails.Rd man/unhideAll.Rd tests/runTests.R vignettes/RCy3.R vignettes/chemviz_vignette.R vignettes/chemviz_vignette.Rmd vignettes/co-occurence_network_vignette.R vignettes/co-occurence_network_vignette.Rmd vignettes/paxtoolsR_vignette.R vignettes/paxtoolsR_vignette.Rmd