getLayoutNames: getLayoutNames

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Retrieve the names of the currently supported layout algorithms. These may be used in subsequent calls to the 'layoutNetwork' function. Note that some of the more attractive layout options, from yFiles, cannot be run except from the user interface; their names do not appear here.

Usage

getLayoutNames(obj)

Arguments

obj	a CytoscapeConnectionClass object.

Value

A list of character strings, e.g., "jgraph-circle" "attribute-circle" "jgraph-annealing"

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

getLayoutNameMapping getLayoutNames getLayoutPropertyNames getLayoutPropertyType getLayoutPropertyValue setLayoutProperties

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cy <- CytoscapeConnection ()
  getLayoutNames (cy)
   #  [1] "jgraph-circle" "attribute-circle" "jgraph-annealing"  ...

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.