setDefaultNodeSize: setDefaultNodeSize

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

In the specified CytoscapeConnection, stipulate the default size for all nodes other than those mentioned in a node size rule.

Usage

setDefaultNodeSize(obj, new.size, vizmap.style.name = "default")

Arguments

obj	a CytoscapeConnectionClass object.
new.size	a integer object, typically 20 to 100.
vizmap.style.name	a String object.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

setDefaultNodeShape setDefaultNodeColor setDefaultNodeSize setDefaultNodeColor setDefaultNodeBorderColor setDefaultNodeBorderWidth setDefaultNodeFontSize setDefaultNodeLabelColor setDefaultEdgeLineWidth setEdgeColorRule setNodeBorderColorRule

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setDefaultNodeSize.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork(cw, 'grid')
  setDefaultNodeSize (cw, 60) # an intermediate value
  # redraw (cw) --> not required anymore

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.