setCommandProperties: Runs a Cytoscape command (for example from a plugin) with a...

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Runs a Cytoscape command (for example from a plugin) with a list of parameters and creates a connection to the network (if a new one is created) so that it can be further manipulated from R.

Usage

## S4 method for signature 'CytoscapeConnectionClass'
setCommandProperties(obj, command.name,
  properties.list, copy.graph.to.R = FALSE)

Arguments

obj	Cytoscape network where command is run via RCy3
command.name	Need more info here - how to specify..
properties.list	Parameters (e.g. files, p-values, etc) to be used to set to run the command
copy.graph.to.R	If true this copies the graph information to R. This step can be quite slow. Default is false.

Value

Runs in Cytoscape and creates a connection to the Cytoscape window so that it can be further manipulated from R

Examples

## Not run: 
cw <- CytoscapeWindow('new.demo', new('graphNEL'))
selectAllNodes(cw)

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.