setNodeLabelRule: setNodeLabelRule

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Specify the node attribute to be used as the label for each node. Non-character attributes are converted to strings before they are used as labels.

Usage

setNodeLabelRule(obj, node.attribute.name, vizmap.style.name = 'default')

Arguments

obj	a CytoscapeWindowClass object.
node.attribute.name	the node attribute whose values will determine the label on each node when this rule is applied.
vizmap.style.name	visual style name, defaults to the style 'default'.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setNodeLabelRule.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'force-directed')
  setNodeLabelRule (cw, 'label')
  setNodeLabelRule (cw, 'type')
  setNodeLabelRule (cw, 'lfc')
  setNodeLabelRule (cw, 'count')

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.