setNodeBorderWidthRule: setNodeBorderWidthRule

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Specify the node attribute which controls the thickness of the node borders displayed in the graph. This is currently only a lookup mapping. An interpolated mapping will be added in the future.

Usage

setNodeBorderWidthRule(obj, node.attribute.name, attribute.values, line.widths,
                       default.width, vizmap.style.name = 'default')

Arguments

obj	a CytoscapeWindowClass object.
node.attribute.name	the node attribute whose values will determine the width of the node border on each node when this rule is applied.
attribute.values	observed values of the specified attribute on the nodes.
line.widths	the corresponding widths.
default.width	use this where the rule fails to apply
vizmap.style.name	visual style name, defaults to the style 'default'.

Value

None.

Author(s)

Tanja Muetze, Georgi Kolishovski, Paul Shannon

See Also

setNodeBorderColorRule (detailed example) getVisualstyleNames

Examples

  ## Not run: 
  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setNodeBorderWidthRule.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'force-directed') 
  node.attribute.values <- c('kinase', 'transcription factor', 'glycoprotein')
  line.widths <- c(0, 8, 16)
  setNodeBorderWidthRule (cw, 'type', node.attribute.values, line.widths)

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.