Files in saezlab/OmnipathR
OmniPath web service client and more

.Rbuildignore
.bumpversion.cfg
.github/workflows/install_by_pak.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/aaa.R R/adecorate.R R/adecorators.R R/annotate_network.R R/annotations.R R/bioplex.R R/bma.R R/cache.R R/chalmers_gem.R R/complexes.R R/complexes_genes.R R/consensuspathdb.R R/cookie.R R/cosmos.R R/dbmanager.R R/ensembl.R R/entity.R R/enz_sub.R R/evex.R R/evidences.R R/extra_attrs.R R/go.R R/graph.R R/guide2pharma.R R/harmonizome.R R/hmdb.R R/homologene.R R/homology.R R/hpo.R R/htridb.R R/id_mapping.R R/inbiomap.R R/interactions.R R/intercell.R R/intercell_curated.R R/internals.R R/kegg.R R/log.R R/misc.R R/netvis.R R/nichenet.R R/obo.R R/oma.R R/omnipath.R R/omnipathr.R R/ontology.R R/options.R R/orthology.R R/pathwaycommons.R R/preppi.R R/print_interactions.R R/ramilowski.R R/ramp.R R/regnetwork.R R/remap.R R/resources.R R/search.R R/static.R R/stitch.R
R/sysdata.rda
R/taxonomy.R R/tfcensus.R R/trrust.R R/uniprot.R R/utils.R R/vinayagam.R R/xml.R R/zenodo.R R/zzz.R README.md
_pkgdown.yml
docs/404.html
docs/CNAME
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
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docs/articles/bioc_workshop.html
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docs/articles/cosmos.html
docs/articles/db_manager.html
docs/articles/drug_targets.html
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docs/articles/index.html
docs/articles/nichenet.html
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docs/reference/kegg_info.html
docs/reference/kegg_open.html
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docs/reference/kegg_pathway_list.html
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docs/reference/kegg_picture.html
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docs/reference/latin_name.html
docs/reference/load_db.html
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docs/reference/nichenet_expression_data.html
docs/reference/nichenet_gr_network.html
docs/reference/nichenet_gr_network_evex.html
docs/reference/nichenet_gr_network_harmonizome.html
docs/reference/nichenet_gr_network_htridb.html
docs/reference/nichenet_gr_network_omnipath.html
docs/reference/nichenet_gr_network_pathwaycommons.html
docs/reference/nichenet_gr_network_regnetwork.html
docs/reference/nichenet_gr_network_remap.html
docs/reference/nichenet_gr_network_trrust.html
docs/reference/nichenet_ligand_activities.html
docs/reference/nichenet_ligand_target_links.html
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inst/CITATION
inst/db/db_def.json
inst/internal/biomart.xml
inst/internal/entity_types.yaml
inst/internal/id_types.json
inst/internal/magic_bytes.json
inst/internal/organisms.yaml
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logo.svg
man/OmnipathR.Rd man/all_uniprot_acs.Rd man/all_uniprots.Rd man/ancestors.Rd man/annotated_network.Rd man/annotation_categories.Rd man/annotation_resources.Rd man/annotations.Rd man/biomart_query.Rd man/bioplex1.Rd man/bioplex2.Rd man/bioplex3.Rd man/bioplex_all.Rd man/bioplex_hct116_1.Rd man/bma_motif_es.Rd man/bma_motif_vs.Rd man/chalmers_gem.Rd man/chalmers_gem_id_mapping_table.Rd man/chalmers_gem_id_type.Rd man/chalmers_gem_metabolites.Rd man/chalmers_gem_network.Rd man/chalmers_gem_raw.Rd man/chalmers_gem_reactions.Rd man/common_name.Rd man/complex_genes.Rd man/complex_resources.Rd man/complexes.Rd man/consensuspathdb_download.Rd man/consensuspathdb_raw_table.Rd man/cookie.Rd man/cosmos_pkn.Rd man/curated_ligand_receptor_interactions.Rd man/curated_ligrec_stats.Rd man/database_summary.Rd man/datasets_one_column.Rd man/descendants.Rd man/dot-omnipathr_options_defaults.Rd man/ensembl_dataset.Rd man/ensembl_id_mapping_table.Rd man/ensembl_id_type.Rd man/ensembl_name.Rd man/ensembl_organisms.Rd man/ensembl_organisms_raw.Rd man/ensembl_orthology.Rd man/ensure_igraph.Rd man/enzsub_graph.Rd man/enzsub_resources.Rd man/enzyme_substrate.Rd man/evex_download.Rd man/evidences.Rd man/extra_attr_values.Rd man/extra_attrs.Rd man/extra_attrs_to_cols.Rd
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man/print_bma_motif_vs.Rd man/print_interactions.Rd man/print_path_es.Rd man/print_path_vs.Rd man/pubmed_open.Rd man/query_info.Rd man/ramilowski_download.Rd man/ramp_id_mapping_table.Rd man/ramp_id_type.Rd man/ramp_sqlite.Rd man/ramp_table.Rd man/ramp_tables.Rd man/regnetwork_directions.Rd man/regnetwork_download.Rd man/relations_list_to_table.Rd man/relations_table_to_graph.Rd man/relations_table_to_list.Rd man/remap_dorothea_download.Rd man/remap_filtered.Rd man/remap_tf_target_download.Rd man/resource_info.Rd man/resources.Rd man/resources_colname.Rd man/resources_in.Rd man/show_network.Rd man/signed_ptms.Rd man/simplify_intercell_network.Rd man/static_table.Rd man/static_tables.Rd man/stitch_actions.Rd man/stitch_links.Rd man/stitch_network.Rd man/stitch_remove_prefixes.Rd man/subnetwork.Rd man/swap_relations.Rd man/swissprots_only.Rd man/tfcensus_download.Rd man/translate_ids.Rd man/translate_ids_multi.Rd man/trembls_only.Rd man/trrust_download.Rd man/uniprot_full_id_mapping_table.Rd man/uniprot_genesymbol_cleanup.Rd man/uniprot_id_mapping_table.Rd man/uniprot_id_type.Rd man/uniprot_idmapping_id_types.Rd man/unique_intercell_network.Rd man/unnest_evidences.Rd man/uploadlists_id_type.Rd man/vinayagam_download.Rd man/walk_ontology_tree.Rd man/with_extra_attrs.Rd man/with_references.Rd man/zenodo_download.Rd
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pkgdown/favicon/favicon.ico
tests/testthat.R tests/testthat/test_import.R
vignettes/.gitignore
vignettes/Bioc.bib
vignettes/author-info-blocks.lua
vignettes/bioc_workshop.Rmd vignettes/cosmos.Rmd vignettes/db_manager.Rmd vignettes/drug_targets.Rmd vignettes/extra_attrs.Rmd
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vignettes/nichenet.Rmd vignettes/omnipath_intro.Rmd vignettes/paths.Rmd
vignettes/scholarly-metadata.lua
saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.