guide2pharma_download: Downloads interactions from the Guide to Pharmacology...
In saezlab/OmnipathR: OmniPath web service client and more

guide2pharma_download

R Documentation

Downloads interactions from the Guide to Pharmacology database

Description

Downloads ligand-receptor interactions from the Guide to Pharmacology (IUPHAR/BPS) database (https://www.guidetopharmacology.org/).

Usage

guide2pharma_download()

Value

A tibble (data frame) of interactions as it is provided by the database

Examples

g2p_data <- guide2pharma_download()
g2p_data
# # A tibble: 21,586 x 38
#    target target_id target_gene_sym. target_uniprot target_ensembl_.
#    <chr>      <dbl> <chr>            <chr>          <chr>
#  1 12S-L.      1387 ALOX12           P18054         ENSG00000108839
#  2 15-LO.      1388 ALOX15           P16050         ENSG00000161905
#  3 15-LO.      1388 ALOX15           P16050         ENSG00000161905
#  4 15-LO.      1388 ALOX15           P16050         ENSG00000161905
# # . with 21,576 more rows, and 33 more variables: target_ligand <chr>,
# #   target_ligand_id <chr>, target_ligand_gene_symbol <chr>,
# ... (truncated)

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.