ensembl_id_mapping_table: Identifier translation table from Ensembl

In saezlab/OmnipathR: OmniPath web service client and more

Identifier translation table from Ensembl

Description

Identifier translation table from Ensembl

Usage

ensembl_id_mapping_table(to, from = "uniprot", organism = 9606)

Arguments

to	Character or symbol: target ID type. See Details for possible values.
from	Character or symbol: source ID type. See Details for possible values.
organism	Character or integer: NCBI Taxonomy ID or name of the organism (by default 9606 for human).

Details

The arguments to and from can be provided either as character or as symbol (NSE). Their possible values are either Ensembl attribute names or synonyms listed at translate_ids.

Value

A data frame (tibble) with columns 'From' and 'To'.

See Also

• translate_ids

• uniprot_full_id_mapping_table

• uniprot_id_mapping_table

• hmdb_id_mapping_table

• chalmers_gem_id_mapping_table

Examples

ensp_up <- ensembl_id_mapping_table("ensp")
ensp_up
# # A tibble: 119,129 × 2
#    From   To
#    <chr>  <chr>
#  1 P03886 ENSP00000354687
#  2 P03891 ENSP00000355046
#  3 P00395 ENSP00000354499
#  4 P00403 ENSP00000354876
#  5 P03928 ENSP00000355265
# # . with 119,124 more rows

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.