curated_ligrec_stats: Statistics about literature curated ligand-receptor...

In saezlab/OmnipathR: OmniPath web service client and more

Statistics about literature curated ligand-receptor interactions

Description

Statistics about literature curated ligand-receptor interactions

Usage

curated_ligrec_stats(...)

Arguments

...	Passed to curated_ligand_receptor_interactions, determines the set of all curated L-R interactions which will be compared against each of the individual resources.

Details

The data frame contains the total number of interactions, the number of interactions which overlap with the set of curated interactions (curated_overlap), the number of interactions with literature references from the given resource (literature) and the number of interactions which are curated by the given resource (curated_self). This latter we defined according to our best knowledge, in many cases it's not possible to distinguish curated interactions). All these numbers are also presented as a percent of the total. Importantly, here we consider interactions curated only if they've been curated in a cell-cell communication context.

Value

A data frame with estimated counts of curated ligand-receptor interactions for each L-R resource.

See Also

curated_ligand_receptor_interactions

Examples

clr <- curated_ligrec_stats()
clr

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.