nichenet_lr_network_ramilowski: Ligand-receptor network from Ramilowski 2015

In saezlab/OmnipathR: OmniPath web service client and more

Ligand-receptor network from Ramilowski 2015

Description

Downloads ligand-receptor interactions from Supplementary Table 2 of the paper 'A draft network of ligand–receptor-mediated multicellular signalling in human' (Ramilowski et al. 2015, https://www.nature.com/articles/ncomms8866). It converts the downloaded table to a format suitable for NicheNet.

Usage

nichenet_lr_network_ramilowski(
  evidences = c("literature supported", "putative")
)

Arguments

evidences

Character: evidence types, "literature supported", "putative" or both.

Value

Data frame with ligand-receptor interactions in NicheNet format.

See Also

• nichenet_lr_network

• ramilowski_download

Examples

# use only the literature supported data:
rami_lr_network <- nichenet_lr_network_ramilowski(
    evidences = 'literature supported'
)

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.