harmonizome_download: Downloads a Harmonizome network dataset

In saezlab/OmnipathR: OmniPath web service client and more

Downloads a Harmonizome network dataset

Description

Downloads a single network dataset from Harmonizome https://maayanlab.cloud/Harmonizome.

Usage

harmonizome_download(dataset)

Arguments

dataset

The dataset part of the URL. Please refer to the download section of the Harmonizome webpage.

Value

Data frame (tibble) with interactions.

Examples

harmonizome_data <- harmonizome_download('phosphositeplus')
harmonizome_data
# # A tibble: 6,013 x 7
#    source   source_desc source_id target target_desc target_id weight
#    <chr>    <chr>           <dbl> <chr>  <chr>           <dbl>  <dbl>
#  1 TP53     na               7157 STK17A na               9263      1
#  2 TP53     na               7157 TP53RK na             112858      1
#  3 TP53     na               7157 SMG1   na              23049      1
#  4 UPF1     na               5976 SMG1   na              23049      1
# # . with 6,003 more rows

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.