nichenet_gr_network_harmonizome: NicheNet gene regulatory network from Harmonizome

In saezlab/OmnipathR: OmniPath web service client and more

NicheNet gene regulatory network from Harmonizome

Description

Builds gene regulatory network prior knowledge for NicheNet using Harmonizome

Usage

nichenet_gr_network_harmonizome(
  datasets = c("cheappi", "encodetfppi", "jasparpwm", "transfac", "transfacpwm",
    "motifmap", "geotf", "geokinase", "geogene"),
  ...
)

Arguments

datasets	The datasets to use. For possible values please refer to default value and the Harmonizome webpage.
...	Ignored.

Value

Data frame with gene regulatory interactions in NicheNet format.

See Also

• nichenet_gr_network

• harmonizome_download

Examples

# use only JASPAR and TRANSFAC:
hz_gr_network <- nichenet_gr_network_harmonizome(
    datasets = c('jasparpwm', 'transfac', 'transfacpwm')
)

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.