ontology_ensure_id: Only ontology IDs

In saezlab/OmnipathR: OmniPath web service client and more

Only ontology IDs

Description

Converts a mixture of ontology IDs and names to only IDs. If an element of the input is missing from the chosen ontology it will be dropped. This can happen if the ontology is a subset (slim) version, but also if the input is not a valid ID or name.

Usage

ontology_ensure_id(terms, db_key = "go_basic")

Arguments

terms	Character: ontology IDs or term names.
db_key	Character: key to identify the ontology database. For the available keys see omnipath_show_db.

Value

Character vector of ontology IDs.

Examples

ontology_ensure_id(c('mitochondrion inheritance', 'GO:0001754'))
# [1] "GO:0000001" "GO:0001754"

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.