omnipath_cache_filter_versions: Filters the versions from one cache record

In saezlab/OmnipathR: OmniPath web service client and more

Filters the versions from one cache record

Description

Filters the versions based on multiple conditions: their age and status

Usage

omnipath_cache_filter_versions(
  record,
  latest = FALSE,
  max_age = NULL,
  min_age = NULL,
  status = CACHE_STATUS$READY
)

Arguments

record	A cache record
latest	Return the most recent version
max_age	The maximum age in days (e.g. 5: 5 days old or more recent)
min_age	The minimum age in days (e.g. 5: 5 days old or older)
status	Character vector with status codes. By default only the versions with 'ready' (completed download) status are selected

Value

Character vector with version IDs, NA if no version satisfies the conditions.

Examples

# creating an example cache record
bioc_url <- 'https://bioconductor.org/'
version <- omnipath_cache_latest_or_new(url = bioc_url)
httr::GET(bioc_url, httr::write_disk(version$path, overwrite = TRUE))
omnipath_cache_download_ready(version)
record <- dplyr::first(omnipath_cache_search('biocond'))

# only the versions with status "ready"
version_numbers <- omnipath_cache_filter_versions(record, status = 'ready')
omnipath_cache_remove(url = bioc_url) # cleaning up

saezlab/OmnipathR documentation built on Oct. 16, 2024, 11:49 a.m.