valley: get the local minimal square standard error (SSE)

In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data

Description

For a giving numeric vectors, calculate the top N local minimal square standard error. It will also include the saved ID if it is in the range of (ss, se)

Usage

valley(x, ss, se, n = 1, savedID = NA, filterByPval = TRUE)

Arguments

x	numeric vector
ss	start searching position
se	end searching position
n	the length of output. If n=-1, output all the local minimal SSE positions.
savedID	saved positions
filterByPval	logical. Filter the positions by p value or not.

Value

a numeric vector, position list.

Author(s)

Jianhong Ou

InPAS documentation built on Nov. 8, 2020, 5:03 p.m.