UTR3eSet: Class 'UTR3eSet'

In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data

Description

An object of class UTR3eSet represents the results of 3UTR usage

Objects from the Class

Objects can be created by calls of the form new("UTR3eSet", usage, PDUI, PDUI.log2, short, long, signals, testRes)

Slots

usage

an GRanges object with CP sites info.

PDUI

a matrix of PDUI

PDUI.log2

log2 transformed PDUI matrix

short

a matrix of usage of short form

long

a matrix of usage of long form

signals

signals used for single sample

testRes

a matrix of test results of testUsage

Methods

$, $<-

Get or set the slot of UTR3eSet

as("UTR3eSet", "ExpressionSet")

Convert a UTR3eSet to an ExpressionSet.

as("UTR3eSet", "GRanges")

Convert a UTR3eSet to an GRanges.

Author(s)

Jianhong Ou

InPAS documentation built on Nov. 8, 2020, 5:03 p.m.