distalAdj: adjust distal CP sites by cleanUpdTSeq
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
adjust distal CP sites by cleanUpdTSeq
Usage
1
Arguments
distalCPs
the output of searchDistalCPs
classifier
cleanUpdTSeq classifier
classifier_cutoff
cutoff value of the classiffier
shift_range
the searching range for the better CP sites
genome
a BSgenome object
step
adjust step, default 1, means adjust by each base by cleanUpdTSeq.
Value
a list could be input of searchProximalCPs
Author(s)
Jianhong Ou
See Also
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
adjust distal CP sites by cleanUpdTSeq
Usage
1 |
Arguments
distalCPs |
the output of searchDistalCPs |
classifier |
cleanUpdTSeq classifier |
classifier_cutoff |
cutoff value of the classiffier |
shift_range |
the searching range for the better CP sites |
genome |
a BSgenome object |
step |
adjust step, default 1, means adjust by each base by cleanUpdTSeq. |
Value
a list could be input of searchProximalCPs
Author(s)
Jianhong Ou
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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