fisher.exact.test: do fisher exact test for two group datasets
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/fisher.exact.test.R
Description
do fisher exact test for two group datasets
Usage
1
fisher.exact.test(UTR3eset, gp1, gp2)
Arguments
UTR3eset
output of getUTR3eSet
gp1
tag names of group 1
gp2
tag names of group 2
Value
a matrix of test results
Author(s)
Jianhong Ou
See Also
singleSampleAnalyze,singleGroupAnalyze,
limmaAnalyze
Examples
1
2
3
4
path <- file.path(find.package("InPAS"), "extdata")
load(file.path(path, "eset.MAQC.rda"))
tags <- colnames(eset$PDUI.log2)
res <- fisher.exact.test(eset, gp1=tags[1:2], gp2=tags[3:4])
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
View source: R/fisher.exact.test.R
Description
do fisher exact test for two group datasets
Usage
1 | fisher.exact.test(UTR3eset, gp1, gp2)
|
Arguments
UTR3eset |
output of getUTR3eSet |
gp1 |
tag names of group 1 |
gp2 |
tag names of group 2 |
Value
a matrix of test results
Author(s)
Jianhong Ou
See Also
singleSampleAnalyze,singleGroupAnalyze,
limmaAnalyze
Examples
1 2 3 4 | path <- file.path(find.package("InPAS"), "extdata")
load(file.path(path, "eset.MAQC.rda"))
tags <- colnames(eset$PDUI.log2)
res <- fisher.exact.test(eset, gp1=tags[1:2], gp2=tags[3:4])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.