PAscore2: calculate the CP score
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
See Also
Description
calculate CP score by cleanUpdTSeq
Usage
1
Arguments
seqname
sequence names
pos
genomic positions
str
strands
idx
offset postion
idx.gp
group number of the offset postion
genome
an object of BSgenome
classifier
a cleanUpdTSeq classifier
classifier_cutoff
classifier cutoff value
Value
a data.frame
Author(s)
Jianhong Ou
See Also
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
calculate CP score by cleanUpdTSeq
Usage
1 |
Arguments
seqname |
sequence names |
pos |
genomic positions |
str |
strands |
idx |
offset postion |
idx.gp |
group number of the offset postion |
genome |
an object of BSgenome |
classifier |
a cleanUpdTSeq classifier |
classifier_cutoff |
classifier cutoff value |
Value
a data.frame
Author(s)
Jianhong Ou
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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