lastCDSusage: extract coverage of last CDS exon region
In InPAS: InPAS: a bioconductor package for the identification of novel alternative PolyAdenylation Sites (PAS) using RNA-seq data
Description
Usage
Arguments
Value
Author(s)
Description
extract coverage of last CDS exon region
Usage
1
lastCDSusage(CDS, coverage, hugeData, BPPARAM=NULL, phmm=FALSE)
Arguments
CDS
GRanges object of CDS
coverage
output of coverageFromBedGraph
hugeData
is it a huge dataset?
BPPARAM
An optional BiocParallelParam
instance determining the parallel back-end to be used during
evaluation, or a list of BiocParallelParam instances, to be applied
in sequence for nested calls to bplapply.
phmm
prepare data for singleSample analysis?
Value
the average coverage of last CDS for each transcript
Author(s)
Jianhong Ou
InPAS documentation built on Nov. 8, 2020, 5:03 p.m.
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Description Usage Arguments Value Author(s)
Description
extract coverage of last CDS exon region
Usage
1 | lastCDSusage(CDS, coverage, hugeData, BPPARAM=NULL, phmm=FALSE)
|
Arguments
CDS |
GRanges object of CDS |
coverage |
output of coverageFromBedGraph |
hugeData |
is it a huge dataset? |
BPPARAM |
An optional |
phmm |
prepare data for singleSample analysis? |
Value
the average coverage of last CDS for each transcript
Author(s)
Jianhong Ou
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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