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Alternative polyadenylation (APA) is one of the important post-transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites due to internal-priming.
Package details |
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Author | Jianhong Ou, Sungmi M. Park, Michael R. Green and Lihua Julie Zhu |
Bioconductor views | AlternativeSplicing Coverage DifferentialSplicing GeneRegulation ImmunoOncology RNASeq Sequencing Transcription |
Maintainer | Jianhong Ou <jianhong.ou@duke.edu>, Lihua Julie Zhu <Julie.Zhu@umassmed.edu> |
License | GPL (>= 2) |
Version | 1.22.0 |
Package repository | View on Bioconductor |
Installation |
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