find_de_genes_eBayes: Find Differentially Expressed genes using Empirical Bayes...

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Find Differentially Expressed genes using Empirical Bayes Statistics

Description

Compute differential expression over time on microarray data using empirical Bayes statistics on a linear model using the eBayes method from the limma package. All differentially expressed genes for each timepoint are reported.

Usage

find_de_genes_eBayes(eset, p_val_cutoff = 0.02)

Arguments

eset	expressionset object with normalized microarray expression.
p_val_cutoff	adjusted p-value cutoff for determining differentially expressed genes.

Value

list with one entry for each non-baseline timepoint

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.