write_matrix: Write matrix to file system

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Write matrix to file system

Description

Write matrix to file system

Usage

write_matrix(
  output_dir,
  matrix_name,
  exprs,
  norm_exprs,
  sum_exprs,
  verbose = FALSE
)

Arguments

output_dir	path to output directory (directory where final matrices will be written)
matrix_name	Name of matrix
exprs	data.table of raw (background-corrected) expression (from makeRawMatrix())
norm_exprs	data.table of normalized expression (from normalizeMatrix())
sum_exprs	data.table of summarized expression (from summarizeMatrix())
verbose	Write verbose print statements?

Details

Writes four versions of flat tsv files:

1. <matrix_name>.raw.tsv: raw, background-corrected values

2. <matrix_name>.tsv: normalized values

3. <matrix_name>.summary.tsv: normalized values, summarized by gene symbol (based on current annotation)

4. <matrix_name>.summary.orig: normalized values, summarized by gene symbol (based on original annotation)

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.