msigdb_immunologic_signatures: Immunologic signatures
In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace
msigdb_immunologic_signatures R Documentation
Immunologic signatures
Description
Gene sets that represent cell states and perturbations within the immune
system. The signatures were generated by manual curation of published studies
in human and mouse immunology. For each study, pairwise comparisons of
relevant classes were made and genes ranked by mutual information. Gene sets
correspond to top or bottom genes (FDR < 0.25 or maximum of 200 genes) for
each comparison. This resource is generated as part of the Human Immunology
Project Consortium (HIPC; http://www.immuneprofiling.org/). NOTE: Gene Symbols
are updated by the updateDataWithLatestHGNCMap.Rmd when it is run. Original is kept as
orig_msigdb.
Usage
data(msigdb_immunologic_signatures)
Format
A list of character of length 1910, with one element
per module.
References
http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=C7
RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.
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| msigdb_immunologic_signatures | R Documentation |
Immunologic signatures
Description
Gene sets that represent cell states and perturbations within the immune system. The signatures were generated by manual curation of published studies in human and mouse immunology. For each study, pairwise comparisons of relevant classes were made and genes ranked by mutual information. Gene sets correspond to top or bottom genes (FDR < 0.25 or maximum of 200 genes) for each comparison. This resource is generated as part of the Human Immunology Project Consortium (HIPC; http://www.immuneprofiling.org/). NOTE: Gene Symbols are updated by the updateDataWithLatestHGNCMap.Rmd when it is run. Original is kept as orig_msigdb.
Usage
data(msigdb_immunologic_signatures)
Format
A list of character of length 1910, with one element
per module.
References
http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=C7
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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