dot-prep_immport_files: Prep ImmPort Files

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Prep ImmPort Files

Description

Prep ImmPort Files

Usage

.prep_immport_files(
  study,
  gef,
  platform,
  input_files,
  analysis_dir,
  verbose = FALSE
)

Arguments

study	study accession eg SDY269
gef	result of ISCon$getDataset("gene_expression_files") for one run.
platform	Sequencing platform: "Illumina", "Affymetrix", "Stanford", or "NA" for RNA-seq.
input_files	input file names
analysis_dir	path to analysis directory
verbose	print verbose logging statements?

Value

path to raw, prepped input files

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.