make_raw_matrix: Make Raw Matrix

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Make Raw Matrix

Description

Using raw input files, create a matrix with raw counts or background-corrected probe intensities, mapped to biosample accessions.

Usage

make_raw_matrix(platform, gef, input_files, verbose = FALSE)

Arguments

platform	Illumina, Affymetrix, or NA
gef	result of ISCon$getDataset("gene_expression_files") for one run.
input_files	input file names
verbose	print verbose logging statements?

Value

A data.table containing raw counts or background-corrected probe intensities with a feature_id column and one column per biosample_accession

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.