orig_msigdb: Immunologic signatures

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Immunologic signatures

Description

Gene sets that represent cell states and perturbations within the immune system. The signatures were generated by manual curation of published studies in human and mouse immunology. For each study, pairwise comparisons of relevant classes were made and genes ranked by mutual information. Gene sets correspond to top or bottom genes (FDR < 0.25 or maximum of 200 genes) for each comparison. This resource is generated as part of the Human Immunology Project Consortium (HIPC; http://www.immuneprofiling.org/).

Usage

data(orig_msigdb)

Format

A list of character of length 1910, with one element per module.

References

http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=C7

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.