retrieve_input_files: Retrieve input files

In RGLab/HIPCMatrix: Microarray and RNA-seq Processing for ImmuneSpace

Retrieve input files

Description

Identify input file location and download and prepare input files as needed, into a format that is standard per platform

Usage

retrieve_input_files(
  study,
  gef,
  meta_data,
  analysis_dir,
  verbose = FALSE,
  reload = FALSE
)

Arguments

study	Study accession
gef	gene expression files
meta_data	List of study-specific metadata
analysis_dir	directory to save intermediate files.
verbose	print verbose logging statements?
reload	re-download files if already found?

RGLab/HIPCMatrix documentation built on Jan. 29, 2023, 5:13 a.m.