referenceSequences: Access the reference sequences of an AVASet
In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
This function give access to a slot of an instance of the AVASet storing information about all reference sequences of the
amplicons.
Usage
1
referenceSequences(object)
Arguments
object
An link{AVASet-class} object.
Value
The data is stored in an object of class AlignedRead and thus gives information about all reference sequences and
their position on a chromosome (if alignShortReads has been called before).
Author(s)
Christoph Bartenhagen
See Also
Examples
1
2
3
4
# load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
referenceSequences(avaSetExample)
R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
This function give access to a slot of an instance of the AVASet storing information about all reference sequences of the amplicons.
Usage
1 | referenceSequences(object)
|
Arguments
object |
An |
Value
The data is stored in an object of class AlignedRead and thus gives information about all reference sequences and
their position on a chromosome (if alignShortReads has been called before).
Author(s)
Christoph Bartenhagen
See Also
Examples
1 2 3 4 | # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
referenceSequences(avaSetExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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