positionQualityBoxplot: Boxplot Of The Quality For Each Position

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

Creates a boxplot of the quality scores over all sequences at each position.

Usage

  positionQualityBoxplot(object, range, binsize=10, 
    xlab=paste("Read position in bp (Bin size: ", binsize, "bp)", sep=""), ylab="Quality score",
    col="firebrick1", ...)

Arguments

object	An object of class QualityScaledDNAStringSet, ShortReadQ or SFFContainer.
range	A numeric vector of length one or two. If length one only bases from the first until this position are plotted. If two all bases between these two positions are plotted.
binsize	Number of positions to summarize in one box in the plot.
xlab	The X axis label.
ylab	The Y axis label.
col	The plotting color.
...	Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.