baseFrequency: Absolute And Relative Frequency Of The Four Bases.
In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System
Description
Usage
Arguments
Details
Value
Author(s)
Description
This function returns the absolute and the relative frequency of the four bases (A, C, G, T).
Usage
1
baseFrequency(object)
Arguments
object
An object of class DNAStringSet, ShortRead or SFFContainer.
Details
This function makes use of the alphabetFrequency function from package
Biostrings.
Value
A data.frame with two columns containing the absolute and relative frequencies
respectively and six rows, one for each of the four bases (A, C, G, T), one for other symbols
contained in the reads and one summarizing the five aforementioned rows.
Author(s)
Christian Ruckert
R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Details Value Author(s)
Description
This function returns the absolute and the relative frequency of the four bases (A, C, G, T).
Usage
1 | baseFrequency(object)
|
Arguments
object |
An object of class DNAStringSet, ShortRead or SFFContainer. |
Details
This function makes use of the alphabetFrequency function from package
Biostrings.
Value
A data.frame with two columns containing the absolute and relative frequencies respectively and six rows, one for each of the four bases (A, C, G, T), one for other symbols contained in the reads and one summarizing the five aforementioned rows.
Author(s)
Christian Ruckert
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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