flowgramBarplot: Create A Barplot Of The Flow Intensities

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

This function creates a barplot of the flow intensities with one bar for each nucleotide in the flow. With the height giving the measured intensity.

Usage

  flowgramBarplot(x, range=c(0, length(flowgram(x))), xlab="Flow sequence", 
    ylab="Flow intensity", col=c(A="black", C="red", G="blue", T="green"), ...)

Arguments

x	An object of class SFFRead.
range	Two positions between which the flows should be plotted.
xlab	The X axis label.
ylab	The Y axis label.
col	The colors in which the four nucleotids should be plotted.
...	Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.