baseQualityHist: Plot A Histogram Of The Base Qualities.

In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System

Description

Create a histogram based on the quality of every single base from all sequences.

Usage

  baseQualityHist(object, xlab="Quality score", ylab="Number of bases", col="firebrick1", breaks=40,
     ...)

Arguments

object	An object of class QualityScaledDNAStringSet, ShortReadQ or SFFContainer.
xlab	The X axis label.
ylab	The Y axis label.
col	The plotting color.
breaks	The number of breaks in the histogram (see ‘hist’).
...	Arguments to be passed to methods, such as graphical parameters (see ‘par’).

Author(s)

Christian Ruckert

R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.