assayDataAmp: Access the amplicon data of an AVASet.
In R453Plus1Toolbox: A package for importing and analyzing data from Roche's Genome Sequencer System
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Similar to assayData of the Biobase ExpressionSet, this function returns the assay data of the amplicon slot of an instance of
the AVASet.
Usage
1
assayDataAmp(object)
Arguments
object
An link{AVASet-class} object.
Value
The assay data of the amplicon slot consists of a list of two data frames with the number of forward and reverse reads of all amplicons for each
sample (see AVASet-class for details).
Author(s)
Christoph Bartenhagen
See Also
fDataAmp, featureDataAmp, AVASet-class
Examples
1
2
3
4
5
# load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
# show contents of amplicon assay data
assayDataAmp(avaSetExample)
R453Plus1Toolbox documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Similar to assayData of the Biobase ExpressionSet, this function returns the assay data of the amplicon slot of an instance of
the AVASet.
Usage
1 | assayDataAmp(object)
|
Arguments
object |
An |
Value
The assay data of the amplicon slot consists of a list of two data frames with the number of forward and reverse reads of all amplicons for each
sample (see AVASet-class for details).
Author(s)
Christoph Bartenhagen
See Also
fDataAmp, featureDataAmp, AVASet-class
Examples
1 2 3 4 5 | # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
data(avaSetExample)
# show contents of amplicon assay data
assayDataAmp(avaSetExample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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