subsetParent: Subset parent hierarchy retrieval method for ExperimentSubset...

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Retrieves a complete 'subset to parent' link from a specified subset.

Usage

subsetParent(x, subsetName)

## S4 method for signature 'SubsetRangedSummarizedExperiment'
subsetParent(x, subsetName)

## S4 method for signature 'SubsetSingleCellExperiment'
subsetParent(x, subsetName)

## S4 method for signature 'SubsetSummarizedExperiment'
subsetParent(x, subsetName)

## S4 method for signature 'SubsetSpatialExperiment'
subsetParent(x, subsetName)

## S4 method for signature 'SubsetTreeSummarizedExperiment'
subsetParent(x, subsetName)

Arguments

x	ExperimentSubset Input ExperimentSubset object.
subsetName	character(1) Specify the name of the subset against which the 'subset to parent link' should be retrieved.

Value

A list containing the 'subset to parent' link.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
subsetParent(es, "subset1pAssay")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.