subsetRownames: subsetRownames

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Get rownames from a subset in the ExperimentSubset object.

Set colnames to a subset in the ExperimentSubset object.

Usage

subsetRownames(x, subsetName)

subsetRownames(x, subsetName) <- value

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
subsetRownames(x, subsetName)

## S4 replacement method for signature 'SubsetRangedSummarizedExperiment,character'
subsetRownames(x, subsetName) <- value

## S4 method for signature 'SubsetSingleCellExperiment,character'
subsetRownames(x, subsetName)

## S4 replacement method for signature 'SubsetSingleCellExperiment,character'
subsetRownames(x, subsetName) <- value

## S4 method for signature 'SubsetSummarizedExperiment,character'
subsetRownames(x, subsetName)

## S4 replacement method for signature 'SubsetSummarizedExperiment,character'
subsetRownames(x, subsetName) <- value

## S4 method for signature 'SubsetSpatialExperiment,character'
subsetRownames(x, subsetName)

## S4 replacement method for signature 'SubsetSpatialExperiment,character'
subsetRownames(x, subsetName) <- value

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
subsetRownames(x, subsetName)

## S4 replacement method for signature 'SubsetTreeSummarizedExperiment,character'
subsetRownames(x, subsetName) <- value

Arguments

x	Input ExperimentSubset object.
subsetName	Name of the subset to set colnames to.
value	Specify the rownames values to replace.

Value

A vector of colnames.

Input object with rownames set to a subset.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
subsetRownames(es, "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.