reducedDimNames-set: reducedDimNames<-

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

A wrapper to the reducedDimNames<- from reducedDims method with additional support for subsets.

Usage

reducedDimNames(x, subsetName) <- value

## S4 replacement method for signature 'ANY'
reducedDimNames(x, subsetName) <- value

## S4 replacement method for signature 'ANY'
reducedDimNames(x, subsetName) <- value

## S4 replacement method for signature 'ANY'
reducedDimNames(x, subsetName) <- value

Arguments

x	Input ExperimentSubset object or any object supported by reducedDimNames<- from reducedDims method.
subsetName	Specify the name of the subset to which the reducedDimNames<- should be set to. If missing, reducedDimNames<- from reducedDims method is called on the main object.
value	Input value same as reducedDimNames<- from reducedDims method.

Value

Input object with reducedDimNames<- set.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(1:1500), cols = c(1:1500),
parentAssay = "counts")
reducedDims(es, subsetName = "subset1") <- list(
PCA_1 = scater::calculatePCA(assay(es, "subset1")),
PCA_2 = scater::calculatePCA(assay(es, "subset1")))
reducedDimNames(es, subsetName = "subset1") <- c("rDim1", "rDim2")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.