getSubsetAssay: Get subset assay from an 'ExperimentSubset' object.

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Get subset assay from an ExperimentSubset object.

Usage

getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetRangedSummarizedExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetSingleCellExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetSummarizedExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetSpatialExperiment,character'
getSubsetAssay(x, subsetName)

## S4 method for signature 'SubsetTreeSummarizedExperiment,character'
getSubsetAssay(x, subsetName)

Arguments

x	Input ExperimentSubset object.
subsetName	Specify 'subset name' or 'subset assay name' to fetch the assay from.

Value

Subset assay

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
getSubsetAssay(es, "subset1")

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.