subsetAssayNames: Name retrieval method for all subset assays in...

In campbio/ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Retrieves the names of all the subsets as well as the subset assays.

Usage

subsetAssayNames(x)

## S4 method for signature 'SubsetRangedSummarizedExperiment'
subsetAssayNames(x)

## S4 method for signature 'SubsetSingleCellExperiment'
subsetAssayNames(x)

## S4 method for signature 'SubsetSummarizedExperiment'
subsetAssayNames(x)

## S4 method for signature 'SubsetSpatialExperiment'
subsetAssayNames(x)

## S4 method for signature 'SubsetTreeSummarizedExperiment'
subsetAssayNames(x)

Arguments

x	ExperimentSubset Input ExperimentSubset object.

Value

A vector containing the names of the subsets and the subset assays available in the input ExperimentSubset object.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
subsetAssayNames(es)

campbio/ExperimentSubset documentation built on Sept. 10, 2021, 3:09 p.m.