unique_junc_mmsplice: Filter junction datasets for unique 'mut_id', 'junc_id',...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Filter junction datasets for unique mut_id, junc_id, tx_id. If there were multiple exon inclusion events predicted to lead to the same combination of mut_id, junc_id, tx_id, only the effect with the maximal score is returned.

Description

Filter junction datasets for unique mut_id, junc_id, tx_id. If there were multiple exon inclusion events predicted to lead to the same combination of mut_id, junc_id, tx_id, only the effect with the maximal score is returned.

Usage

unique_junc_mmsplice(junc_data)

Arguments

junc_data

A tibble with junctions. The tibble should contain the columns mut_id, tx_id, junc_id and delta_logit_psi and might have individual sets of other tool/source specific columns. This tibble can be created with annotate_mmsplice().

Value

A filtered tibble with unique junctions based on the columns mut_id, tx_id, junc_id. The event with the maximal delta_logit_psi is kept.

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.