leafcutter_transform: Imports "*perind.counts.gz" from LeafCutter output and...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Imports "*perind.counts.gz" from LeafCutter output and transforms the raw output into standardized junction output format. Results of one patient should be stored in the given path.

Description

Imports "*perind.counts.gz" from LeafCutter output and transforms the raw output into standardized junction output format. Results of one patient should be stored in the given path.

Usage

leafcutter_transform(path)

Arguments

path	The path to leafcutter output

Value

A tibble in standardized junction format

Examples

path <-  system.file("extdata", "", package = "splice2neo")
leafcutter_juncs <- leafcutter_transform(path)
leafcutter_juncs

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.