is_canonical: test if junction is canonical junction
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
is_canonical R Documentation
test if junction is canonical junction
Description
test if junction is canonical junction
Usage
is_canonical(junc_id, ref_junc, exons_gr)
Arguments
junc_id
vector of junction id to test
ref_junc
vector of canonical reference junctions
exons_gr
GRanges of canonical exons
Value
logical vector of same length as junc_id indicating
if the input junc_id is in the set of reference junctions ref_junc or
consists of two directly adjacent positions (intron retention) and
overlaps (completely within) a canonical exon from exons_gr.
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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| is_canonical | R Documentation |
test if junction is canonical junction
Description
test if junction is canonical junction
Usage
is_canonical(junc_id, ref_junc, exons_gr)
Arguments
junc_id |
vector of junction id to test |
ref_junc |
vector of canonical reference junctions |
exons_gr |
GRanges of canonical exons |
Value
logical vector of same length as junc_id indicating
if the input junc_id is in the set of reference junctions ref_junc or
consists of two directly adjacent positions (intron retention) and
overlaps (completely within) a canonical exon from exons_gr.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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