get_peptide_context: Get peptide context sequence given a tibble with...
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
get_peptide_context R Documentation
Get peptide context sequence given a tibble with
intron_retention
normalized_protein_junc_pos
is_first_reading_frame
frame_shift
exon1_end_AA
exon1_end_AA_WT
exon2_start_AA_WT,
protein_len
protein_len
protein_length_difference
protein
Description
Get peptide context sequence given a tibble with
intron_retention
normalized_protein_junc_pos
is_first_reading_frame
frame_shift
exon1_end_AA
exon1_end_AA_WT
exon2_start_AA_WT,
protein_len
protein_len
protein_length_difference
protein
Usage
get_peptide_context(df, flanking_size = 14)
Arguments
df
Data frame with information about position of junction etc.
flanking_size
number amino acids left and right of the breakpoint or novel sequence part
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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| get_peptide_context | R Documentation |
Get peptide context sequence given a tibble with
intron_retention
normalized_protein_junc_pos
is_first_reading_frame
frame_shift
exon1_end_AA
exon1_end_AA_WT
exon2_start_AA_WT,
protein_len
protein_len
protein_length_difference
protein
Description
Get peptide context sequence given a tibble with
intron_retention
normalized_protein_junc_pos
is_first_reading_frame
frame_shift
exon1_end_AA
exon1_end_AA_WT
exon2_start_AA_WT,
protein_len
protein_len
protein_length_difference
protein
Usage
get_peptide_context(df, flanking_size = 14)
Arguments
df |
Data frame with information about position of junction etc. |
flanking_size |
number amino acids left and right of the breakpoint or novel sequence part |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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