import_star_sj: Imports tabular STAR SJ.out.tab splice junctions
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
import_star_sj R Documentation
Imports tabular STAR SJ.out.tab splice junctions
Description
Imports tabular STAR SJ.out.tab splice junctions
Usage
import_star_sj(file.name)
Arguments
file.name
Path to STAR SJ.out.tab
Value
A tibble with one splice junction per row and columns
chromosome, intron_start, intron_end, strand_enc, motif_enc,
annotation, uniquely_mapping_reads, multi_mapping_reads, alignment_overhang
Examples
path <- system.file("extdata", "test_star_SJ.out.tab", package = "splice2neo")
splice2neo:::import_star_sj(path)
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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| import_star_sj | R Documentation |
Imports tabular STAR SJ.out.tab splice junctions
Description
Imports tabular STAR SJ.out.tab splice junctions
Usage
import_star_sj(file.name)
Arguments
file.name |
Path to STAR SJ.out.tab |
Value
A tibble with one splice junction per row and columns chromosome, intron_start, intron_end, strand_enc, motif_enc, annotation, uniquely_mapping_reads, multi_mapping_reads, alignment_overhang
Examples
path <- system.file("extdata", "test_star_SJ.out.tab", package = "splice2neo")
splice2neo:::import_star_sj(path)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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