generate_junction_id: Given the chromosome, junction start, junction end and...

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Given the chromosome, junction start, junction end and strand, a junction id is created that follows the format: ⁠<chr>:<start>-<end>:<strand>⁠

Description

Given the chromosome, junction start, junction end and strand, a junction id is created that follows the format: ⁠<chr>:<start>-<end>:<strand>⁠

Usage

generate_junction_id(chr, start, end, strand)

Arguments

chr	The chromosome
start	The start of the junction
end	The end of the junction
strand	Strand information. "+" or "-"

Value

The junction id in the format ⁠<chr>:<start>-<end>:<strand>⁠

Examples

generate_junction_id(chr = "chr1", start = 50, end = 100, strand = "+")

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.