is_start_on_exon: Tests if start or and end of junc is on exon.
In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations
is_start_on_exon R Documentation
Tests if start or and end of junc is on exon.
Description
Tests if start or and end of junc is on exon.
Usage
is_start_on_exon(tx_lst, jx_lst, intron_retention)
Arguments
tx_lst
transcripts a GRangesList with
transcripts defined as GRanges of exons.
jx_lst
splice junctions as GRanges objects in list format
intron_retention
logical vector indicating if junctions belong to an intron retention event
Value
a logical vector indicating if start or and end of junc is on exon.
TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.
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| is_start_on_exon | R Documentation |
Tests if start or and end of junc is on exon.
Description
Tests if start or and end of junc is on exon.
Usage
is_start_on_exon(tx_lst, jx_lst, intron_retention)
Arguments
tx_lst |
transcripts a |
jx_lst |
splice junctions as GRanges objects in list format |
intron_retention |
logical vector indicating if junctions belong to an intron retention event |
Value
a logical vector indicating if start or and end of junc is on exon.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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