modify_tx: Modify transcript by introducing splice junctions

In TRON-Bioinformatics/splice2neo: Aberrant splice junction analysis with associated mutations

Modify transcript by introducing splice junctions

Description

Modify transcript by introducing splice junctions

Usage

modify_tx(tx, jx)

Arguments

tx	transcripts a named GRangesList with transcripts defined as GRanges of exons.
jx	splice junctions as GRanges objects with the same length as tx.

Value

a GRangesList with altered transcripts.

Examples

tx <- GenomicRanges::GRangesList(
  list(GenomicRanges::GRanges(c(
     "1:2-3:+",
     "1:5-6:+",
     "1:10-15:+"
  )))
)

jx <- GenomicRanges::GRanges(c("1:3-10:+"))

modify_tx(tx, jx)

TRON-Bioinformatics/splice2neo documentation built on July 27, 2024, 3:25 a.m.