rcpp_parallel_distance: distance matrix using C++
In IMB-Computational-Genomics-Lab/scGPS: A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

Description Usage Arguments Value Examples

This function provides fast and memory efficient distance matrix calculation

1	rcpp_parallel_distance(mat)

mat

an R matrix (expression matrix), rows are genes, columns are cells

a distance matrix

1
2
3

mat_test <-matrix(rnbinom(1000000,mu=0.01, size=10),nrow=10000)
#library(microbenchmark)
#microbenchmark(rcpp_parallel_distance(mat_test), dist(mat_test), times=3)

IMB-Computational-Genomics-Lab/scGPS documentation built on Dec. 6, 2020, 3:20 p.m.

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IMB-Computational-Genomics-Lab/scGPS
A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

rcpp_parallel_distance: distance matrix using C++
In IMB-Computational-Genomics-Lab/scGPS: A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

Description

Usage

Arguments

Value

Examples

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IMB-Computational-Genomics-Lab/scGPS A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

rcpp_parallel_distance: distance matrix using C++ In IMB-Computational-Genomics-Lab/scGPS: A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

Description

Usage

Arguments

Value

Examples

Related to rcpp_parallel_distance in IMB-Computational-Genomics-Lab/scGPS...

R Package Documentation

Browse R Packages

We want your feedback!

IMB-Computational-Genomics-Lab/scGPS
A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

rcpp_parallel_distance: distance matrix using C++
In IMB-Computational-Genomics-Lab/scGPS: A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)