find_stability: Calculate stability index

In IMB-Computational-Genomics-Lab/scGPS: A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)

Description

from clustering results, compare similarity between clusters by adjusted Randindex

Usage

find_stability(list_clusters = NULL, cluster_ref = NULL)

Arguments

list_clusters	is a object from the iterative clustering runs
cluster_ref	is a object from the reference cluster

Value

a data frame with stability scores and rand_index results

Author(s)

Quan Nguyen, 2017-11-25

Examples

day5 <- day_5_cardio_cell_sample
mixedpop2 <-new_summarized_scGPS_object(ExpressionMatrix = day5$dat5_counts, 
    GeneMetadata = day5$dat5geneInfo, CellMetadata = day5$dat5_clusters)
cluster_all <-clustering(object=mixedpop2)
stab_df <- find_stability(list_clusters=cluster_all$list_clusters,
                         cluster_ref = cluster_all$cluster_ref)

IMB-Computational-Genomics-Lab/scGPS documentation built on Dec. 6, 2020, 3:20 p.m.